Search for dendrogram

Shazia Erum, Rashid Anwar and Shahid Masood*

... tested genotypes on the dendrogram, due to the geographical environment of Kasur in Punjab. In this connection ‘Benefit sharing’ mechanism can be accelerated by escalating farmer’s participation for more cultivation in the interest of country.

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Mubashir Ahmad Khan*, Muhammad Yasin Mirza*, Muhammad Amjad*, Nazakat Nawaz*, Malik Shah Nawaz* and Doulat Baig*

ASSESSMENT OF GENETIC DIVERSITY IN GERMPLASM OF LINSEED ( L.)

RAPD based Genetic Diversity of Endangered Himalayan Gray Langur (Semnopithecus ajax) Populations of Pakistan

Riaz Aziz Minhas^1,*, Muhammad Nasim Khan¹, Muhammad Siddique Awan¹, Basharat Ahmad¹, Syda Shaista Bibi¹, Mohsin Hanif¹ and Afsar Mian²

...ns was high. UPGMA based dendrogram identified five distinct geographic groups, and Mantel tests (Rxy=-0.008, P>0.05) suggested a non-significant relationship between genetic distance and geographic distance. Phist (Φ_PT) value suggested a significance difference in within population and between populations (_PT=0.042; p=0.006) variances, suggesting that within populations variation was higher (96%) than variatio...

Study of Genetic Diversity in Pakistani Germplasm of Sesame (Sesamum indicum L.)

Mubashir Ahmad Khan*, Nazakat Nawaz, Muhammad Arshad, Muhammad Ayub Khan, Tahira, Doulat Baig, Ihsan Ullah Khan and Shamim ul Sibtain Shah

Khan Sher^1*, Muhammad Nisar² and Muhammad Subhan¹

...053. The Two Way Cluster dendrogram was conducted for 12 polymorphic SSR markers, which disseminated all common bean lines into two major linkages. Lineage I split at 50% similarity index into 5 clusters and sub clusters. On the same way lineage II split into two clusters at 19 % similarity index. The Genetic similarity (GS) based on SSR markers between pair of common bean lines showed high degree of dissimilarity in the genetic makeup ranging from 0.91 to 0.1...

Genetic Characterization of Selected Domestic Populations of Channel Catfish (Ictalurus punctatus) using Microsatellites

Qingzhan Ma¹, Bo Wu¹, Jianping Jiang² and Zhaobin Song^1,3*

...cture analysis and UPGMA dendrogram suggested that there were close genetic relationships between POPA and POPE, POPA and POPG, and POPF and POPH, respectively. POPH showed serious inbreeding based on F_is analysis.

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A.N. Ashfaque1, F. Shahina1 and S. Dawar2

Diversity of nematode fauna associated with cotton fields of high temperature areas of Sindh, Pakistan

...bjected to construct the dendrogram for interpretation on the basis of their prevalence. In order to estimate nematode species diversity, richness and evenness, the data has been submitted for calculating the diversity parameters such as Dominance (D), Simpson’s diversity index (1-D), Shannon diversity index (H’), Evenness (e), Brillouin Diversity Index (HB), Menhinik Diversity , Margalef's richness index, Equitability (J) and Fisher's alpha. All e...

Khan Sher¹*, Muhammad Subhan¹, Muhammad Nisar², Ali Hazrat², Zahid Fazal¹, Gul Rahim², Imran Ahmad¹, Riaz ul Haq¹ and Shamia Bibi₁

Genetic Diversity in Common Beans (Phaseolus vulgarus L.) Collected from Different Ecological Zones of Malakand Division (A Part of the Sino Japanese Region of Pakistan)

...e present germplasm. The dendrogram in one-way cluster analysis distributed 55 lines into 2 lineages (I and II). The former was comprised of 24% bean landraces, while the latter was comprised of 76% landraces. In correlation coefficients 45 combinations were identified having strong positive correlation. The strongest correlations (above 50%) were computed 67% of all the combinations. The principal component analysis (PCA) identified quantitative variability o...

Analysis of Genetic Variations in Soybean using Simple Sequence Repeat (SSR) Markers

Mashal Malik and Mudassar Nawaz Khan*

Evaluation of Genetic Diversity in Barley Landraces through Agro-Morphological and Biochemical Characterization

Arshad Khan¹, Mohammad Ihsan¹, Mohammad Nisar¹, Ali Hazrat¹*, Murad Ali³, Rashid Ul-Haq³, Khalid Khan², Karishma Gul¹ and Shah Faisal¹

... respectively. A cluster dendrogram tree was constructed which was divided into two linkage and further divided into seven clusters. The variation was found among the clusters. The information obtained from the study is useful in planning further crop improvement.

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Genetic Studies for Detection of Most Diverse and High Yielding Genotypes among Chickpea (Cicer arientinum L.) Germplasm

Muhammad Tariq Mahmood¹*, Muhammad Akhtar², Kaiser Latif Cheema², Abdul Ghaffar³, Imtiaz Ali⁴, Muhammad Jahanzaib Khalid² and Zeshan Ali⁵

... clusters. Agglomerative dendrogram of genotypes was constructed by Ward’s method. On the basis of Euclidean distance it was observed that members of cluster 3 (G.P-110, G.P-111, G.P-115, G.P-116, G.P-121, G.P-125, G.P-138, G.P-139, G.P-150, G.P-151, G.P-164, G.P-165) and cluster 4 (G.P-112, G.P-126, G.P-140, G.P-152, G.P-166) were most diverse. Results also showed that the genotypes of cluster 3 were high yielding and genetically diverse as well. Theref...

Assessment of PCR-Based DNA Fingerprinting Techniques as a Novel Approach for Genotyping of Brucella Strains in Egypt

Nour H. Abdel-Hamid1*, Walid Elmonir2, Eman I. M. Beleta1, Rania I. Ismail1, Momtaz Shahein1, Mahmoud E. R. Hamdy1

...th ERIC-PCR and RAPD-PCR dendrograms clustered B. abortus isolates into two clusters and three genotypes with discriminatory of 0.8 and 0.72. Both ERIC and RAPD PCRs revealed 25 singleton genotypes (G) out of 35 genotypes. DNA-based typing techniques showed substantial diversity among the Brucella isolates. The genetic diversity among Brucella genotypes obtained in this study may suggest that the Brucella strains have been introduced into the country either in...

Biodiversity Evaluation among Wild Jujube (Ziziphus nummularia (Burm. F.) Population in Thal Desert of Pakistan

Naseem Sharif^1,2*, Imran Muhammad Siqqique², Muhammad Kashif Raza³, Urwa Irshad¹, Muhammad Ikhlaq Khan⁴, Ammara Noreen⁴ , Muhammad Ahsan Qureshi¹, Mohsin Abbas⁵, Muhammad Maaz Aziz⁵, Sitwat Riaz⁵, Komal Aslam⁵ and Naseem Akhtar⁶

Assessment of Genetic Parameters, Agro-Morphologic Stability and Clustering Pattern of Promising Candidate Basmati Rice (Oryza sativa L.) Lines

Zulqarnain Haider¹*, Muhammad Akhter², Syed Sultan Ali¹, Tahir Latif¹, Rana Ahsan Raza Khan¹, Awais Riaz¹, Tahira Bibi¹, Muhammad Ijaz³, Qasim Raza¹, Mohsin Ali Raza⁴, Samina Sarfaraz¹, Muhammad Iqbal¹ and Muhammad Rafiq¹

Phylogenetic Relationship among Indigenous Cattle Breeds of Pakistan Based on RAPD Markers

Muhammad Saif-ur Rehman¹, Faiz-ul Hassan¹* and Muhammad Sajjad Khan²

...re performed to generate dendrogram using unweighted pair group method of arithmetic means (UPGMA). Six hundred and four amplified bands were observed from successful amplifications of 73 primers (average 8.2 bands per prime). Only seven primers amplified no product or unidentifiable (smeared) bands. A total of 68 polymorphic bands were observed, showing 11.25 % polymorphism on average across cattle breeds. Results revealed a low genetic variation among the ca...

A DNA Barcode Library of Some Neuroptera from Azerbaijan

Ilhama G. Kerimova¹*, Viktor A.Krivokhatsky², Merve N. Aydemir³ and Lala N. Mamedova⁴

...iffer from each other in dendrogram by more than 10%. The NJ tree shows that the genus Myrmecaelurus (Costa, 1855) is supported by 97-100%, and it is connected with another close genus Nohoveus (Navás, 1918) (Azerbaijanian N. zigan) and Chinese population of N. atrifrons (Hölzel, 1970). The sequences of Bubopsis hamata (Klug, 1834) (IGK25) and B. andromache (Aspöck et al., 1979) (IGK26) turned to be identical. A genetic approach forces us to s...

Phylogenetic analysis and biological studies of entomopathogenic nematode Steinernema abbasi isolates

F. Shahina† and G. Mehreen

...lts were presented using dendrogram of the

association groups hierarchical cluster analysis.

...

Nematodes associated with datepalm orchards of Kairpur district Sindh, Pakistan

Z. Gill and K. Firoza†

.../div>

(3.84%). The dendrogram indicted that there was 4 groups of 8 localities in relation to 32 nematode species.

Morphological and taxonomical studies indicated that all nematode genera and species have been identified and

recorded for the first time from date palm orchards of Khairpur district. Merlinius nothus Allen, (1955) Siddiqi,

1980, is reported as a new record nematode species in Pakistan. It is briefly redes...

DNA Markers Based Genetic Polymorphism in Natural Populations of Channa marulius

Mamona Jabeen¹, Sumra Naz¹, Hina Amjad¹, Khalid Abbas¹*, Sajid Abdullah¹, Muhammad Anjum Zia², Taqwa Safdar¹ and Muhammad Sarfraz Ahmed¹

...ions (15.48%). The UPGMA dendrogram based on Nei’s genetic distance revealed that the C. marulius population was divided into two major clusters. This study would be helpful to underpin the causes of decline in genetic diversity of C. marulius and provide significant guidelines over the effective management and conservation strategies for sustainable fisheries of Channa species in Pakistan.

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Molecular Identification and Genetic Diversity of Notopterus notopterus (Pallas, 1769) Using Mitochondrial COI Gene and RAPD Markers in Riverine Water of Pakistan

Waqas Ahmad*, Muhammad Naeem

...versity in Chenab. UPGMA dendrogram revealed that Indus and Jehlum riverine populations, and Satluj and Ravi populations of N. notopterus has close genetic similarity. Maximum likelihood tree revealed that N. notopterus identified from Pakistan has close genetic link with N. notopterus reported from Indo-Myanmar and India. Present study successfully reported molecular identification and genetic diversity of N. notopterus. Moreover, low genetic diversity report...

Evaluation of Genetic Diversity in Wild Rhynchosia capitata through Morphomatric and Biochemical Character Collected from District Dir Lower

Shahid Iqbal¹, Arshad Khan, Ali Hazrat¹*, Gul Rahim, Mohammad Ihsan¹, Umar Zad Gul¹, Maryam Bibi¹, Khadija Bibi¹ and Muhammad Mukhtiar²

Multi-Locus Genetic Analysis in Silver Carp Populations of Indus River as Influenced by Restocking Programs

Taqwa Safdar, Khalid Abbas*, Muhammad Sarfraz Ahmed, Hina Amjad, Sumra Naz and Jamal Kazam

... genetic distance, UPGMA dendrogram was constructed that resulted in two clusters: one cluster consisted of JB and CB while other consisted of GG, GB and TB. The findings of this research will be useful for restoring, conservation and monitoring the natural aquatic fish species in Pakistan.

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Unknown

Nour H. Abdel-Hamid1*, Walid Elmonir2, Eman I. M. Beleta1, Rania I. Ismail1, Momtaz Shahein1, Mahmoud E. R. Hamdy1

Pakistan Journal of Zoology

Featuring

Molecular Detection and Genetic Characterization of Peste des Petits Ruminant Virus in Punjab, Pakistan

TGF-β Mediates the Role of P53 and microRNA-Related Signaling Pathways in the Pathogenesis of Diabetic Nephropathy in Rats

Latrine Site Selection by the Asian Badger (Meles leucurus) in a Temperate Forest of South Korea

Growth Performance of Labeo rohita Fingerlings Fed with Lactobacillus rhamnosus Supplemented Canola Meal and Corn Gluten-Based Feeds

Unknown

Nour H. Abdel-Hamid1*, Walid Elmonir2, Eman I. M. Beleta1, Rania I. Ismail1, Momtaz Shahein1, Mahmoud E. R. Hamdy1

Pakistan Journal of Zoology

October

Featuring

Molecular Detection and Genetic Characterization of Peste des Petits Ruminant Virus in Punjab, Pakistan

TGF-β Mediates the Role of P53 and microRNA-Related Signaling Pathways in the Pathogenesis of Diabetic Nephropathy in Rats

Latrine Site Selection by the Asian Badger (Meles leucurus) in a Temperate Forest of South Korea

Growth Performance of Labeo rohita Fingerlings Fed with Lactobacillus rhamnosus Supplemented Canola Meal and Corn Gluten-Based Feeds

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