Prevalence of Two Distinct Genotypes of Highly Pathogenic Avian Influenza A/H5N8 Viruses in Backyard Waterfowls in Upper Egypt During 2018
Prevalence of Two Distinct Genotypes of Highly Pathogenic Avian Influenza A/H5N8 Viruses in Backyard Waterfowls in Upper Egypt During 2018
Asmaa A. M. Abdel-Ghany1, Ahmed N. El Taweel2, Yassmin Moatasim2, Nagwa S. Ata1, Amany Adel3, Ayman Hany El-Deeb4, Ahmed Kandeil2, Mohamed A. Ali2*, Hussein Ali Hussein4*
The geographic sites which the samples were collected in Assiut governorate in Egypt, Red dots represent the geographic sites which the samples were collected in Assiut governorate in Egypt.
Phylogenetic analysis of HA and NA segments of the Egyptian H5N8 viruses, both the two isolates of this study are related to Egyptian H5N8 strains of clade 2.3.4.4.b which indicated with a black dot. Duck/BA3C/2018 is related to the Egyptian subgroup II and the Goose/BA71C/2018 is related to Egyptian subgroup I
Neighbor joining phylogenetic trees of PB2, PB1, PA, NP, M, and NS genes of the detected H5N8 viruses in backyard in upper of Egypt comparing with published H5N8 sequences.
Genetic constellation of two Egyptian HPAI H5N8 viruses that identified in backyard in upper of Egypt in 2018.
