Whole-Genome Sequencing Mapping of Candidate Genes of Cervus Nippon Hortulorum, Presumed to be Sika Deer from the Korean Peninsula
Yong Su Park1a, Dong Won Seo2a, You Sam Kim2, Myung Hum Park2, Min Jee Oh3, Sang Hwan Kim3,4*
1Research Center for Endangered Species, National Institute of Ecology, 1210, Geumgang-ro, Maseo-myeon, Seocheon-gun, Chungcheongnam-do, Korea; 2TNT Research Co., Ltd. 102, Wonjangdong-gil, Deokjin-gu, Jeonju-si, Jeonbuk-do, Republic of Korea; 3School of Animal Life Convergence Science, Hankyong National University, Jungang-ro, Ansung, Gyeonggi-do, Republic of Korea; 4Institute of Applied Humanimal Science, Hankyong National University, 327, Jungang-ro, Ansung, Gyeonggi-do, Republic of Korea; aYong-Su Park and Dong Won Seo contributed equally to this work.
*Correspondence | Sang Hwan Kim, School of Animal Life Convergence Science, Hankyong National University, Jungang-ro, Ansung, Gyeonggi-do, Republic of Korea; Email:
[email protected]
Figure 1:
The Cervus nippon, which is thought to have been distributed in Korea, China, and Russia, was estimated to be a subspecies of C. n. hortulorum (McCullough 2009; McCullough et al., 2009; Saggiomo et al., 2020).
Figure 2:
Photographs of the Sika deer sampling site and Sika deer farm used in this study; A: Sika deer sampling site; B: Farm where Sika deer are raised.
Figure 4:
Phylogenetic tree result using CST2 primer set for 10 Korean native deer.
Figure 5:
Phylogenetic tree result using CST39 primer set for 7 Korean native deer.
Figure 3:
Throughput and Q20/Q30 scores of Raw data.