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Cloning and Expression of Truncated Spike (Sf200) Glycoprotein of Infectious Bronchitis Virus (IBV) in Escherichia coli, and its Immunogenicity to Mice




Cloning and Expression of Truncated Spike (Sf200) Glycoprotein of Infectious Bronchitis Virus (IBV) in Escherichia coli, and its Immunogenicity to Mice

Basit Zeshan1,2,*, Mushtaq A. Saleem2, Javed Iqbal Wattoo2, Mohd Mokhtar Arshad1 and Maizan Mohamed1

1Faculty of Veterinary Medicine, Universiti Malaysia Kelantan, Kota Bharu 16100, Kelantan, Malaysia

2Faculty of Life Sciences, University of Central Punjab, Lahore, Pakistan


Complete S1 gene of the Infectious Bronchitis Virus (IBV) was amplified and cloned into transfer vector. Truncated S1 gene designated as Sf200 (containing five antigenic sites located at 24–61, 291–398 and 497–543 amino acid residues of S1 glycoprotein) were amplified by overlap PCR, cloned into prokaryotic expression vector resulting pET-Sf200 and confirmed the construct by sequencing. The recombinant plasmid was identified by restriction enzyme and sequencing analysis. The in vitro expression of the truncated protein was analyzed in E. coli with a molecular weight of 38kDa determined through SDS-PAGE and confirmed by Western blotting. The recombinant truncated protein was then purified from the culture media. The immunogenicity of the protein was studied in an animal experiment on mice, in which mice were injected subcutaneously. These findings suggest that the truncated Sf200 expressed in the pET-32a (+) prokaryotic vector can be used as antigen to detect antibodies against IBV.

Article Information

Received 25 August 2017

Revised 13 October 2017

Accepted 01 November 2017

Available online 19 April 2018

Authors’ Contribution

BZ did experimental work. MMA and MM helped in data analysis. JIW and MAS helped during writing the manuscript.

Key words

IBV, Truncated spike glycoprotein, Infectious bronchitis virus Truncated S1, Sf200.


* Corresponding author:

0030-9923/2018/0003-0989 $ 9.00/0

Copyright 2018 Zoological Society of Pakistan



Infectious Bronchitis Virus (IBV) belong to Cornoaviridae family is the etiological agent of Infectious Bronchitis (IB) disease in poultry. This disease is highly contagious and has economic significance due to decreased egg production and quality. The main clinical manifestations in affected birds are related to respiratory problems. However, it causes extensive damage to in various parts of the body including kidney and the oviduct (Cavanagh, 2003; Yu et al., 2001; Liu and Kong, 2004). In many reports, the nephropathic lesion have been observed in vaccinated flocks which strongly suggest that the currently used IB vaccination may not providing good protection (Cavanagh and Naqi, 1997).

The IBV encodes four major structural proteins, known as, envelope (E) protein, membrane (M) protein, nucleocapsid (N) protein and spike (S) glycoprotein. The spike glycoproteins are synthesized as precursor glycoprotein which post translationally cleaved into two subunits, S1 and S2. The S1 subunit plays an important role in the attachment of the virus to the host cell membrane as it carries receptors for the virus attachment. The neutralizing epitopes for induction of T cytotoxic lymphocytes as well as induction of antibodies for virus neutralization are also present in S1 (Kant et al., 1992; Koch et al., 1990). The amino acid sequence of S1 subunit is highly variable (Cavanagh et al., 1992) however, some studies have demonstrated that it was an excellent candidate for developing recombinant vaccines, monoclonal antibodies (mAbs) and polyclonal for developing the diagnostic reagents as compared to other structural proteins (Wang et al., 2002; Johnson et al., 2003). The expression of Spike gene has been reported in various prokaryotic and eukaryotic expression systems (Jain et al., 2017; Sepideh et al., 2012; Zhou et al., 2003).

In this study, keeping in view the antigenic mapping regions in S1 of IBV (as the complete S1 about 1650 base pairs (bp) is very difficult to be expressed in Escherichia coli (E. coli) we expressed truncated spike polypeptide antigen produced in E. coli designated as Sf200 {(truncated S1 having five antigenic regions on amino acids residues (aa) 24–61 (S1D), (aa) 291–398 (S1CAB) and (aa) 497–543 (S1F)} construct was cloned into pET-32a (+) vector and expressed in E. coli BL21. The polyclonal antibodies were developed in mice by using the recombinant Sf200 protein inoculated into mice. The polyclonal antibodies were used to identify the recombinant adenovirus as well as E. coli expressed Sf200 protein.


Materials and methods

Animals, virus and sera

A new highly virulent nephropathogenic IBV strain named CK/CH/XDC-2/2013 field strains of IBV Gene bank accession number KM213963 were isolated from the chickens showing typical signs and postmortem lesion of the disease. The virus was propagated into 9 days old specific pathogen-free (SPF) embryos. The eggs were harvested immediately if there was death of the embryo noticed by candling. The 50% Embryo infective dose (EID50) was calculated by inoculating serial 10-fold dilutions of virus into SPF embryonated chicken eggs. Four-week-old SPF BALB/c mice were purchased local suppliers. The serum samples collected from the mice were stored at -20°C until used.

Total RNA extraction and cDNA synthesis

The total RNA was extracted from the allantoic fluid using TRIzol reagent (Thermo Fisher Scientific) according to the manufacturer’s protocol. RNA pellet was dried, re-suspended and washed by ethanol. The pellet was suspended in diethyl pyrocarbonate (DEPC) treated water and processed immediately for subsequently cDNA preparations. For reverse transcription 3µl (0.5µg/ µl) total RNA was used at 37°C for 1h using 1µl Oligo (Oligo(dT) 10pmol/µl), 0.5µl dNTP (7.5Mm/ µl), 5X RT buffer and 0.5µl (200U/µl) of M-MLV Reverse transcriptase (Promaga, USA).

Amplification, cloning of S1 and selection of protein gene Sf200

Conventional PCR was performed in thermocycler (Eppendorff Mastercycler, USA). Three pairs of primers were designed to amplify complete S1 gene of IBV (Table I) and cloned into pMD18-T vector using 25µl total volume mixture containing 12.5µl PCR master mix, 3µl cDNA, 0.5µl (10 pmol) of each pair of primer (listed in Table I) and 8.5µl of ddH2O. Three fragments of 150 bp, 351 bp, and 162 bp were amplified using primers (Table I). PCR Reaction was carried out at different annealing temperature and extension time depending on fragment lengths (Table I). Amplified products were visualized and photographed by digital Gel Doc Transilluminator imaging system (Hamamatsu, Japan) at 1% agarose gel electrophoresis.

Construction of plasmid pET-32a-Sf200

After amplification of these three fragments, they were ligated with overlap PCR. The PCR products were purified and sub-cloned into a prokaryotic expression pET-32a (+) vector (Novagen, USA). The recombinant expression plasmid was constructed as pET-Sf200 and confirmed by sequencing analysis.

Expression of recombinant Sf200 protein

The transformed E. coli BL21 containing the recombinant plasmid was propagated in LB broth containing ampicillin (0.1 mg/ml) overnight at 37°C with rapid shaking (160 rpm). In order to make the culture fresh, one milliliter of overnight grown bacterial was inoculated into 100 ml of fresh LB broth with ampicillin antibiotic at 0.1 mg/ml. When the OD600 reached 0.6, the culture was induced by adding isopropyl β-d-1-thiogalactopyranoside (IPTG) of 1 mM followed by further incubation for four hours on shaker. Under the optimized expression conditions, 100 ml of bacterial culture was collected and centrifuged at 12000 g for 30 min at room temperature. The resultant pellets were re-suspended with 1/10 volume of Buffer A (100 mm NaH2PO4.2H2O, 10 mm Tris base and 8 m urea, pH 8.0) and then sonicated on ice.

Purification of recombinant Sf200 protein

The fusion protein expressed by recombinant pET-32 α (+) vector contains His-Tag which is often used for affinity purification by Ni-NTA spin kit according to manufacturer’s protocol (Qiagen). Briefly, the supernatant was collected after centrifugation at 12000 g for 30 min at 4°C, and slowly added onto Ni-NTA affinity chromatography column balanced with 8 ml Buffer B (100 mm NaH2PO4.2H2O, 10 mm Tris-base and 8 m urea, pH 6.3). Buffer C (100 mm NaH2PO4.2H2O, 10 mm Tris-base and 8 m urea, pH 5.9) and Buffer D (100 mm NaH2PO4.2H2O, 10 mm Tris-base and 8 m urea, pH 4.5) with 4 ml each were used to elute the bound protein and the eluted solution was collected in 1 ml aliquot. The protein bands were separated by SDS-PAGE and the truncated protein was detected by Western Blot.

Immunogenicity studies in mice

Generation of polyclonal antibodies

The purified recombinant pET-Sf200 protein emulsified with Freund’s complete adjuvant was injected into five BALB/c mice through subcutaneously (S/C) route using 26 gauge needle with an infectious dose of 50μg per mouse. The second booster dose was injected at 21 days S/C route. The last third booster dose of the antigen emulsified with Freund’s incomplete adjuvant was injected at 40 days through intraperitoneal (I/P) route. The mice were sacrificed after two weeks at days and the blood samples were collected.

SDS-PAGE and Western blot analysis

The molecular weight of the E.coli expressed Sf200 protein was estimated by running it on SDS-PAGE electrophoresis (run through the stacking gel at 50 V. Then, the resolving gel was run at 100 V) followed by western blotting to in order to determine the binding properties and immunoreactivity with minor modifications of the method described by Zeshan et al. (2011) and Calandrella et al. (2001). Firstly the protein samples were boiled in water bath for five minutes and loaded to the SAD-PAGE 10% gel for 45 min. The bands were transferred to nitrocellulose membrane and probed using polyclonal antibodies raised in mice. Secondary antibody i.e. goat anti-mouse IgG conjugated with horseradish peroxidase (Boster Bio-Tech.) was used at the dilution of 1:3000 in PBS-T. Proteins were visualized using chemiluminescence luminol reagents (Thermo Scientific Super Signal West Femto Maximum Sensitivity Substrate). After developing the band, the membrane was washed with water to remove the substrate solution.



Cloning and sequence analysis of S1 gene

RNA was extracted from the allantoic fluid containing IBV virus and cDNA was constructed. Using set of primers (Table I), the complete S1 gene of IBV was amplified by RT-PCR and cloned into pMD-18 T vector resulting pMD-18 T-S1. The ligation was confirmed by restriction enzyme digestion and sequencing (Fig. 1). The proper open reading frame (ORF) of the gene was checked upon sequence analysis which was right followed by BLAST in NCBI, Gene Bank, which showed 99% similarity with IBV nephropathogenic strain isolated from Hebei, China.

Cloning of Sf200 by overlap PCR and expression and identification of prokaryotic recombinant

Three fragments of 150 bp, 351 bp and 162 bp were amplified from pMD-18 T-S1 with the help of forward and reverse primers as shown in Table I. The PCR products were run at 1% agarose gel. The three fragments were joined together by overlap PCR with 660 bp size (Fig. 2). Proper ligation and of the overlapped fragments was confirmed by sequencing and restriction enzyme analysis using BamHI and XhoI (Fig. 3).



Table I.- Primer sequences, PCR Conditions and restriction enzyme sites complete S1 and truncated S1 gene fragments of field strain of IBV.

S No. Primer ID Sequence Enzyme site Gene ID (Size) PCR conditions
1 S1-F


XhoI S1 (1650)

Denaturation: 94°C/45s

Annealing: 60°C/45s

Extension: 72°C/60s

2 S1-R


3 Sense 1


BamHI S1D (150bp)

Denaturation: 94°C/45s

Annealing: 56°C/30s

Extension: 72°C/20s


No site

5 Sense 2 5' CAGGCAATAAAGGTGGTGTTG ATAC 3' No site S1CAB (351bp)

Denaturation: 94°C/45s

Annealing: 53°C/30s

Extension: 72°C/30s

7 Sense 3 5' TGACGCAGCCTTGTGAGGATG TTAA 3' No site S1F (162bp)

Denaturation: 94°C/45s

Annealing: 60°C/30s

Extension: 72°C/20s

8 Anti 3






SDS-PAGE and Western blotting

After induction by 1 mm IPTG at 37°C for 4 h, the Sf200 proteins were found in the inclusion bodies in cell lysate of E. coli BL21 (DE3) with the molecular weight of around 40 kDa, approx. which was consistent with the predicted values, and recognized by mouse anti-S1 polyclonal antibodies as well as the homologous chicken anti-IBV serum (Fig. 5). The expressed Sf200 protein was purified, and their corresponding yields in bacteria culture were calculated to be determined by presence of 2.5 mg of pure S1 protein. Additionally, we also expressed the full-length of S1 protein or fragments of S1 protein in E. coli. Unfortunately, this protein can be expressed at very low level.





Avian IBV is a significant pathogen of commercial poultry causing huge economic losses to the poultry industry worldwide. The severity of the disease is increased by the secondary bacterial infection leading to chronic complicated airsacculitis and nephritis. Diagnosis of IB is based on virus isolation or demonstration of viral nucleic acid and determination of of an ascending serum antibody response may also be useful. The S1 protein is a structural glycoprotein and is a key factor of virus neutralization and so is an excellent candidate for development of the novel IBV vaccines. S1 gene has also been used for development of ELISA kits (Gomaa et al., 2009; Hu et al., 2007; Loa et al., 2004).

In this study, Sf200 protein S1 gene of field strain of IBV was expressed in E. coli BL21 strain at a higher level using a prokaryotic pET32a (+) vector system. The expressed proteins can bind further with mouse anti-IBV serum, indicating that the recombinant Sf200 protein is a potential valuable antigen for developing to detect antibody of IBV S1 protein and for an engineering subunit vaccine against IBV. The S1 region carries the receptor binding domain that defines tissue and host tropisms. Besides, it is responsible for serotype variability among IBV isolates (Sepideh et al., 2012). However, IBV S1 protein is characterized by presence of a signal peptide domain at the extreme 5′ end of the gene that was found to block successful cloning and expression of the complete S1 gene. To overcome this, a fragment of the S gene was selected for cloning and expression based on B cell epitope prediction (Larsen et al., 2006).

The observed molecular mass at 38 kDa of the expressed fusion Sf200 protein is within the expected range. There are additional amino acids for the histidine tag in the C-terminal of the expressed fusion protein. These extra amino acids increase the molecular mass of expressed target protein.

Therefore, in future research, the specific location of amino acid residues involved in the epitopes needs to be further examined by mAbs as well as by using prokaryotic expression of S1 cDNA overlapping peptides. A preliminary ELISA method using the recombinant S1 protein as coating antigen could also be developed, which would have industrial application as well. A recombinant partial S1 protein has the potential to be used as a recombinant Ag in diagnostic kits in future.


Statement of conflict of interest

Authors have declared no conflict of interest.




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Pakistan Journal of Zoology


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