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Genetic Diversity Comparison of Pampus minor between Chinese and Malaysian Populations Inferred from mtDNA Cytb

Genetic Diversity Comparison of Pampus minor between Chinese and Malaysian Populations Inferred from mtDNA Cytb

Yuan Li1, Liyan Zhang2, Karhoe Loh3, Ji Feng1, Xinqing Zheng1, Puqing Song1 and Longshan Lin1,*

1Third Institute of Oceanography, State Oceanic Administration, Xiamen 361005, China
2Fujian Institute of Oceanography, Xiamen 361012, China
3Institute of Ocean and Earth Sciences, University of Malaya, Kuala Lumpur 50603, Malaysia

Yuan Li and Liyan Zhang have contributed equally to this paper.

*      Corresponding author: linlsh@tio.org.cn

 

Fig. 1.

Pampus minor Liu and Li, 1998.

Fig. 2.

NJ tree of Cytb haplotypes of P. minor. Bootstrap supports >50 in 1,000 replicates.

Fig. 3.

Unrooted minimum spanning tree depicting the genetic relationship among the Cytb haplotypes of P. minor. Circle sizes are proportional to the haplotype frequency. Perpendicular tick marks on the lines joining the haplotypes represent the number of nucleotide substitutions.

Fig. 4.

Mismatch distributions of Cytb haplotypes of P. minor.

Fig. 5.

Bayesian skyline plots showing NefT (Nef, effective population size; T, generation time) changes over time for P. minor based on Cytb sequences. The upper and lower limits of the blue line represent the 95% confidence intervals of highest posterior densities (HPD) analysis. The black line represents median estimates of NefT.

Pakistan Journal of Zoology

December

Vol. 50, Iss. 6, Pages 1999-2398

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